PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 98aa    MW: 11132.5 Da    PI: 5.2112
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.68.1e-102668145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++ ++++E+ l+++ +++ G + W++Ia +++ gRt++++  + +
   XP_016487460.1 26 KLQFSEDEEMLIAKMFNLVGQR-WSLIAGRIP-GRTPEEIEKYCN 68
                     6789*****************9.*********.******988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-52573IPR001005SANT/Myb domain
PfamPF002499.2E-92768IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-112869IPR009057Homeodomain-like
SuperFamilySSF466891.56E-72869IPR009057Homeodomain-like
CDDcd001674.84E-72968No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MADEQSSTSN NACVVSAETT TEETSKLQFS EDEEMLIAKM FNLVGQRWSL IAGRIPGRTP  60
EEIEKYCNSR YVIHKPAKCL KISSSVNEER RKFENNLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487460.15e-68PREDICTED: MYB-like transcription factor ETC3 isoform X1
SwissprotO220593e-17CPC_ARATH; Transcription factor CPC
TrEMBLK4CFE81e-28K4CFE8_SOLLC; Uncharacterized protein
STRINGSolyc07g052490.2.14e-28(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.12e-17MYB_related family protein